The One Codex Blog Posts tagged with notebooks

We’ve made major updates to our library for fetching, analyzing, and visualizing your One Codex data in a Jupyter notebook. In this post we walk you through a handful of real-world examples of what you can do with these powerful new tools.

Today, we’re extremely excited to announce several new features we’ve been working on for the past few months. Collectively, these should make it both easier and faster to perform custom, large-scale analyses, explore your data, and build applications atop the One Codex platform:

• A new easier-to-use, more powerful API (read the docs)
• A new version of our command-line interface and an accompanying Python client library for quickly getting started with the new API (take a peek on Github)
• And last but not least – interactive notebooks built directly into the platform!

The new Notebooks feature allows you to launch secure Jupyter (née IPython) notebooks automatically configured for access to your samples and analyses on One Codex. Internally, we’ve already found these incredibly useful for both quick, flexible explorations of metagenomic data as well as more sophisticated, formal analyses.