Running new analyses & whole-genome alignments
Today we’d like to tell you about a new feature on One Codex that allows you to run new analyses against your samples, including AMR gene panels and whole-genome alignments.
Running New Analyses
When samples are uploaded to One Codex, we automatically classify them using the One Codex Database of ~40K complete microbial genomes. However, metagenomic classification is just one of a range of microbial analysis tools provided by the One Codex platform. While in the past we’ve configured additional analyses to run automatically where appropriate (e.g., MLST for common bacterial isolates) or at the request of users, our new Run Analysis page allows you to run an in silico panel or perform whole-genome alignments against any of your samples.