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We are thrilled to announce the largest update to our database to date, which now encompasses over 148,000 high-quality reference genomes spanning the entire taxonomic tree. The benefits of increasing the taxonomic breadth of our classifier are multiplied when combined with analytical workflows for microbiome discovery, clinical metagenomics, and genomic epidemiology.
on January 5, 2023We are happy to announce that One Codex now supports importing data from the Sequence Read Archive (SRA), allowing for quick comparison and analysis of publicly available sequencing data and associated metadata.
Today we’re pleased to announce the latest update and expansion to the One Codex Database! This update includes the most recent revision of the NCBI taxonomy, improves characterization of complex microbial communities, and increases coverage of species present in the mouse gut microbiome. This release marks our most comprehensive database yet, cataloging over 127,000 genomes across more than 80,000 species. For a comprehensive list of what’s included, check out our references page.
on October 19, 2022On behalf of the whole One Codex team, I’m delighted to share that we have spun out One Codex from Invitae as an independent company! I’m extremely grateful to our customers and our team, past and present, for making this transition possible. For everyone who relies on the One Codex platform as the home for their metagenomics research, here are the key points you need to know: The One Codex Platform will continue to be available and operate as-is with no interruptions in service.
on June 9, 2021In March of 2020, a few weeks after the WHO declared a global COVID-19 pandemic, One Codex released a free, publicly available pipeline for processing different types of SARS-CoV-2 sequencing data (WGS, amplicon, hybrid capture). This pipeline is automatically run on any One Codex sample in which SARS-CoV-2 is detected, and is part of our effort to contribute what we can towards the public health response. We’re happy to announce that One Codex has now updated our SARS-CoV-2 pipeline with additional and improved features that reflect the changing nature of the pandemic.
